rear sun roof drains into the sill, and sill drain holes will be blocked, easy fix,
remove rear inside panel, below the rear side window, put ya hand in, and feel around where the wheel arch is, you should be able to feel the pipe, get some smaller bore pipe to push in the end to extend the sunroof pipe, drill a hole in the sill from underneath, paint the bare metal, then poke the pipe through the hole and cut to length,
do both sides, there is also 2 at the front, 1 either side in the front pillars,there for the front drain pipes.
hope this helps