It took a long time but I've finally sorted it.
I was convinced the problem was going to be in the wet immobiliser continuity box.
I towed the car to a garage who took a week to get around to looking at it and couldn't fix it. They gave it me back saying their immobilizer equipment didn't go old enough for NATS2.
Then I bought a replacement Immob Cont Box and had a automotive locksmith on it who spent a couple of hours looking it over couldn't communicate with it using any of his equipment and couldn't suggest any way forward.
Another auto locksmith (who was miles and miles away) suggested I transplant the big chip in the middle of the board onto my replacement Immob Cont Box. That part would host my ECU and Key codes. It sounded plausible to me but looked impossible to achieve.
I gave both boxes to my friend who works in the electronics industry and told him what I wanted. He took a look and said he'd first like to have a go at fixing the original board. Ok I said.
This is what he gave me back to 'try.'
He said he'd found a number of reasons why it wouldn't have worked.
Several broken tracks, one on the board and 3 that go 'through' the board ie between circuits on top to those on the bottom - hence the link wires.
A couple of broken surface mount resistors.
A wobbly leg on the input plug contacts meet the board.
So I plug it in and guess what! It works again! I've mounted it higher and upside down so it can't happen again ;-)
Just goes to show dunnit?